Genetic Confirmation of Cougars (Puma concolor) in
Eastern Canada
Le Duing Lang, Nathalie Tessier, Marc Gauthier, Renee Wissink,
Hélène Jolicoeur, and François-Joseph Lapointe
Northeastern Naturalist, Volume 20, Issue 3 (2013): 383–396
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2013 NORTHEASTERN NATURALIST 20(3):383–396
Genetic Confirmation of Cougars (Puma concolor) in
Eastern Canada
Le Duing Lang1, Nathalie Tessier1, Marc Gauthier2, Renee Wissink3,
Hélène Jolicoeur4, and François-Joseph Lapointe1,*
Abstract - This paper presents the results of a long-term study to detect the presence of
Puma concolor (Cougar) in eastern Canada. We installed 38 scratching posts to attract
wild Cougars and collect hair samples in several national and provincial parks in Québec,
New Brunswick, and Nova Scotia. A set of semi-nested primers was used to discriminate
Cougar samples from other mammalian species based on variation in the16S rRNA gene
of the mitochondrial DNA. Our analyses performed on 476 hair samples revealed 19
positive identifications of Cougars in Québec and New Brunswick. Sequencing further
showed that some specimens were from South America, whereas others had a North
American origin. We discuss the implications of these results for the conservation of
Cougars in eastern Canada.
Introduction
The last Puma concolor couguar Kerr (Eastern Cougar), which once flourished
in North America (Hall 1981), was reportedly killed near the Maine/
Québec border in 1938 (Wright 1961). Yet, in the last three decades, sightings,
tracks, and mortalities of wild Cougars have increased steadily (van Dyke and
Brocke 1987). From 1970 to 1993, 180 and 315 reports have been filed in New
Brunswick and Nova Scotia, respectively (Stocek 1995). In Québec, 1061
sightings were reported from 1955 to 2005 (Jolicoeur et al. 2006, Tardif 1997),
whereas 497 pieces of evidence were collated in Ontario from 1991 to 2010
(Rosatte 2011). Since 1983, more than 2000 observations have been gathered in
the eastern US (Bolgiano et al. 2000, Cardoza and Langlois 2002, Lutz and Lutz
1996). Confirmed occurrences include tracks discovered in Maine, Virginia, West
Virginia, Ontario, and New Brunswick (Bolgiano et al. 2000, Cumberland and
Dempsey 1994, Rosatte 2011), DNA-based identification of scat or hair samples
from New Brunswick, Ontario, Michigan, and Louisiana (Bertrand et al. 2006,
Harris 2007, Leberg et al. 2004, Rosatte 2011, Swanson and Rusz 2006), and
specimens killed in West Virginia and Illinois (Bolgiano et al. 2000, Heist et al.
2001). In Québec, three Cougar mortalities have also been documented: a male
Cougar was shot in May 1992, a second Cougar was hit by a truck in April 1996
and subsequently mounted by a taxidermist, and a third Cougar was hit by a car
in September 2002.
1Département de Sciences Biologiques, Université de Montréal, C.P. 6128, Succursale
Centre-Ville, Montréal, QC, H3C 3J7, Canada. 2Genivar, Inc., 171 Rue Léger, Sherbrooke,
QC, J1L 1M2, Canada. 3Fundy National Park, PO Box 1001, Alma, NB, E4H
1B4, Canada. 4Direction du Développement de la Faune, Ministère des Ressources naturelles
et de la Faune, 930 Chemin Sainte-Foy, 3e étage, Québec, QC, G1S 2L4, Canada.
*Corresponding author - francois-joseph.lapointe@umontreal.ca.
L.D. Lang, N. Tessier, M. Gauthier, R. Wissink, H. Jolicoeur, and F-J. Lapointe
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Controversies surrounding the Cougar sighting reports in eastern North
America have been conflated by a number of conflicting issues related to the
identification, taxonomy, and conservation status of Cougars. Several methods
have been developed to detect the presence of Cougars in the wild, including the
analysis of tracks (Beier and Cunningham 1996, Lewinson et al. 2001, Smallwood
and Fitzhugh 1993), the chromatography of bile acid from scats (Fernandez
et al. 1997), the macroscopic and microscopic analysis of hair (Harrison 2002),
and the use of DNA-based identification (Mills et al. 2000). Based on these techniques,
some studies authenticated the species’ presence in Michigan, Ontario,
and New Brunswick (Bertrand et al. 2006, Bolgiano et al. 2000, Cumberland
and Dempsey 1994, Swanson and Rusz 2006, Rosatte 2011, Wright 1953), some
could not confirm it (Belant et al. 2006, Brown 2005, Downing 1984, Gerson
1988), while others suggested that it was presumably extinct (Culver et al. 2000,
Parker 1998, Scott 1998, Young and Goldman 1946).
Taxonomic debate has further complicated interpretations of the status of the
Eastern Cougar. Young and Goldman (1946) described 15 subspecies of Cougar
in North and South America, respectively, with two subspecies in eastern North
America: P. c. couguar (Eastern Cougar) and P. c. coryi (Florida Panther).
Molecular methods have informed this taxonomy more recently. Numerous
microsatellite loci have been designed and employed to assess the genetic
structure of Cougar populations (Culver et al. 2001, Holbrook et al. 2012,
Kurushima et al. 2006, Rodzen et al. 2007), and mitochondrial DNA (mtDNA)
has been used to determine the genomic ancestry and clarify the taxonomy of
the Cougar. Namely, the analysis of three mitochondrial genes revealed that
it is impossible to distinguish the Eastern Cougar from other North American
Cougars (Culver et al. 2000). In other words, all North American Cougars are
the same subspecies, Puma concolor couguar. Here, we follow this recommendation
and consider North American Cougars as a single subspecies (see also
Wilson and Reeder 2005), which can be differentiated from Central and South
American subspecies on the basis of mtDNA variation. The molecular classification,
however, is not agreed upon by all biologists and has not been adopted
by management agencies in the US and Canada.
The taxonomy of Puma concolor has important implications for the conservation
and management of Cougars in North America. Since 1978, the US Fish
and Wildlife Service (USFWS), which maintains the classification of Young and
Goldman (1946), had listed the Eastern Cougar as endangered, although it was
not actively protected (Cardoza and Langlois 2002). After a five-year review, the
subspecies P. c. couguar (Eastern Cougar, following Young and Goldman 1946)
was, however, delisted in the US, based upon extinction (McCollough 2011).
In Canada, the Committee on the Status of Endangered Wildlife (COSEWIC)
initially listed P. c. couguar as endangered (Van Zyll de Jong and van Ingen
1978). In 1998, COSEWIC reassigned the Eastern Cougar to the data deficient or
indeterminate category (Scott 1998). Different provinces and states have granted
conservation status to the Cougar, but Québec is the only jurisdiction in eastern
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2013 Northeastern Naturalist Vol. 20, No. 3
North America that still considers the Eastern Cougar present on its territory
(Jolicoeur et al. 2006).
In this paper, we present a broad-scale application of molecular identification
techniques to detect the presence of Cougars in eastern Canada. Scent-baited
scratching posts were installed to collect hair samples in the southern part of
Québec and two localities in New Brunswick and Nova Scotia. Species-specific
mtDNA primers were designed to quickly screen a large number of samples and
discriminate Cougars from other mammalian species. Each positive sample was
further sequenced using one of three mtDNA regions to determine its corresponding
geographical ancestry (Central and South America or North America). Based
on our results, we discuss the conservation status and provide recommendations
on the management of Cougars in eastern Canada.
Methods
Sample collection
Since 2001, a large number of scratching posts (n = 38) have been installed at
various sites in the provinces of Québec, New Brunswick, and Nova Scotia. The
selected sites were located in national parks (Cape Breton Highlands, Forillon,
Frontenac, Fundy, Mauricie), provincial parks (Gaspésie, Mont-Tremblant), and
some other localities (Estrie, Montérégie) where Cougar sightings have been reported
(Fig. 1). In order to maximize pheromone dispersion, local topography and
predominant wind direction were considered, and the posts were placed in remote
forested areas to avoid human disturbance. Forest composition varied among areas
and was mainly composed of Acer saccharum Marsh. (Sugar Maple), Carya
cordiformis (Wang.) K. Koch (Bitternut Hickory), Tilia americana L. (American
Basswood), Betula alleghaniensis Britt. (Yellow Birch), Betula espapyrifera
Marsh. (Paper Birch), Abies balsamea (L.) P. Mill. (Balsam Fir), or Picea rubens
Sarg. (Red Spruce). Each scratching post consisted of a 2-m PVC pipe covered
with a plastic boot mat and wrapped in barbed wire to increase the probability
of sampling hairs. Several field teams working in the different areas visited the
posts once a month to apply a scent lure based on Cougar urine and to collect
hair samples. The samples were stored at room temperature in paper envelopes
or plastic bags and sent to the lab for genetic identification.
From 2001 to 2012, a total of 476 hair samples were collected from the
scratching posts. Three known Cougar samples from Québec were also obtained
and analyzed to confirm their identification and assess the geographical origin
of the specimens: (1) a muscle sample from a specimen that was shot in 1992,
(2) a skin sample from a stuffed Cougar that was hit by a truck in 1996, and
(3) hair and dried blood samples collected from the bumper of the car that hit a
Cougar in 2002.
Molecular identification of field samples
Hair samples collected from the same post and that had similar macroscopic
characteristics were pooled to increase the quantity of extracted DNA (Alpers et
L.D. Lang, N. Tessier, M. Gauthier, R. Wissink, H. Jolicoeur, and F-J. Lapointe
2013 Northeastern Naturalist Vol. 20, No. 3
386
al. 2003, Frantz et al. 2004, Goossens et al. 1998, Roon et al. 2003). These hairs
were cut into smaller pieces (0.5–1 cm) and soaked in 150 μL of a lysis buffer
with 40 mM Tris-HCl pH 9.0, 50 mM KCl, 0.5% Tween 20, and proteinase K (0.1
mg/mL concentration) at 37 °C overnight followed by 15 min at 95 °C (Olsen et
al. 1996). The DNA extract was then centrifuged for 12 min at 14,000 rpm. The
supernatant was transferred to a new tube, centrifuged at 14,000 rpm for another
12 min, and subsequently used for DNA amplification.
Due to its low divergence rate, the 16S rRNA region of mtDNA was selected
to design species-specific primers for Cougar identification (Lopez et al. 1997).
Sequences from 11 species from five mammalian families (one Bovidae, two Cervidae,
two Ursidae, one Canidae, and five Felidae) were retrieved from GenBank
and aligned using ClustalX (Thompson et al. 1997) to identify divergent sites.
Figure 1. Sampling sites and positive identifications of Cougars in eastern Canada. Black
circles represent the scratching posts installed at different localities, and grey circles
represent scratching posts with positively identified Cougar samples. The letters refer to
the labels in Table 2. QC = Québec, NB = New Brunswick, NS = Nova Scotia.
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The sizes of the targeted regions were minimized to ensure efficiency and repeatability
(Frantz et al. 2004, Roon et al. 2003). A first primer set (16S-Universal-F:
GAG GG(C/T) TT(A/T) ACT GTC TCT TAC and 16S-Universal-R: GGG TAA
CTT GTT CCG TTG ATC) was designed to amplify a fragment of about 300
bp in all mammals, with slight differences across species. These primers were
thus used as a positive control indicating PCR success. A species-specific primer
(16S-Cougar-F: AGA GAC CCA TTA ATT TC) was also designed to amplify an
additional internal 138-bp fragment only for the Cougar, when used in combination
with the previous reverse primer (16S-Universal-R). Consequently, the
analysis of a Cougar sample should produce two bands in a multiplex PCR reaction
using our semi-nested sets of primers. Other mammals should only exhibit
the universal fragment of 300 bp.
Multiplex PCR was carried out in 50-μL volumes containing 10 μL of DNA
extract, 10 mM Tris-HCl (pH 8.3), 50 mM KCl, 0.1% Triton X-100, 2.5 mM
of MgCl2, 0.3 μM of each of the three primers (16S-Universal-F, 16S-Cougar-
F, and 16S-Universal-R), 250 μM dNTP, and 1U of Ampli Taq Gold DNA
polymerase (Roche Applied Science, Indianapolis, IN). Amplifications were
performed in a GeneAmp® PCR System 9700 thermal cycler (Applied Biosystem,
Foster City, CA) with an initial incubation at 94 °C for 2 min, followed by
a PCR profile of 40 cycles of 94 °C for 60 sec, 53 °C for 90 sec, and 72 °C for
90 sec, with a final extension step at 72 °C for 10 min. PCR products were run
in a 2% agarose gel using Vistra Green Nucleic Acid Stain (Amersham Biosciences,
Buckinghamshire, UK) to visualize the DNA fragments. Extractions
and amplifications were conducted in separate areas of the lab (Taberlet et al.
1999), and negative controls (blank PCR) were always used to avoid contamination
(Kwok and Higuchi 1989).
The performance of the universal and species-specific primers was assessed
using 57 hair samples of known identity representing 22 different species of
mammals, including four Cougar samples collected from zoos or museums
(Table 1). As expected, all samples exhibited the universal fragment, but the
species-specific primers accurately amplified the second fragment in known Cougar
samples. More importantly, this fragment was only observed in Cougars.
Geographical ancestry
Each sample positively identified as a Cougar with the species-specific
primers was further analyzed to determine the geographical origin of the corresponding
specimen, based on a subset of the haplotypes identified in Culver
et al. (2000). To do so, three genes were successively employed until we were
able to obtain a long enough sequence for assigning the corresponding mtDNA
region to a unique haplotype. We used the 16S rRNA, NADH-dehydrogenase-5
(ND5) and ATPase-8 (ATP8) primers defined in Johnson et al. (1998) to amplify
a 376-bp, a 315-bp, and a 162-bp region, respectively. These fragments were
then sequenced in both directions using Big Dye® Terminator v1.1 (Applied
Biosystems) on an ABI 3100 automated sequencer (Applied Biosystems). The
sequences were visualized with 4Peaks (version 1.6), and identification was
L.D. Lang, N. Tessier, M. Gauthier, R. Wissink, H. Jolicoeur, and F-J. Lapointe
2013 Northeastern Naturalist Vol. 20, No. 3
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further confirmed with respect to the 14 haplotypes in Culver et al. (2000). We
were only interested in assessing the geographical ancestry of Cougars to discriminate
South and Central American Cougars (haplotypes A–L in Culver et al.
2000) from North American Cougars (haplotypes M–N in Culver et al. 2000).
This determination was made by identifying single mutations in the mtDNA
Table 1. Species used to assess the performance of the universal primers and to validate the
species-specific primer designed for the Cougar. MRNF = Ministère des Ressources Naturelles et
de la Faune du Québec
Family/species Common name n Sample Source
Hominidae
Homo sapiens L. Human 4 Hair Lab members
Cervidae
Odocoileus virginianus Zimmermann White-tailed Deer 4 Hair MRNF, QC
Muridae
Ondatra zibethicus (L.) Muskrat 1 Hair MRNF, QC
Peromyscus leucopus (Rafinesque) White-footed Mouse 4 Muscle MRNF, QC
Peromyscus maniculatus (Wagner) Deer Mouse 4 Muscle MRNF, QC
Mustelidae
Gulo gulo (L.) Wolverine 1 Muscle U. of Alberta, AB
Lutra canadensis (Schreber) River Otter 1 Hair MRNF, QC
Martes americana (Turton) Marten 3 Hair MRNF, QC
Mustela erminea (L.) Shorttail Weasel 1 Hair MRNF, QC
Mustela frenata Lichtenstein Longtail Weasel 1 Hair MRNF, QC
Mustela vison (Schreber) Mink 1 Hair MRNF, QC
2 Muscle U. of Alberta, AB
Procyonidae
Procyon lotor (L.) Raccoon 1 Hair MRNF, QC
1 Muscle U. of Alberta, AB
Ursidae
Ursus americanus (Pallas) Black Bear 2 Hair MRNF, QC
2 Muscle U. of Alberta, AB
Canidae
Canis lupus familiaris L. Domestic Dog 2 Hair Lab members
Canis latrans Say Coyote 2 Hair MRNF, QC
Canis lupus L. Gray Wolf 2 Muscle U. of Alberta, AB
Alopex lagopus (L.) Arctic Fox 1 Hair MRNF, QC
Vulpes velox (Say) Swift Fox 2 Muscle U. of Alberta, AB
Felidae
Felis catus L. Domestic Cat 4 Hair Lab members
Lynx canadensis Kerr Canada Lynx 1 Hair Granby Zoo, QC
1 Hair MRNF, QC
2 Muscle U. of Alberta, AB
Lynx rufus (Schreber) Bobcat 1 Hair Granby Zoo, QC
1 Hair MRNF, QC
1 Muscle MRNF, QC
Puma concolor (L.) Cougar 1 Hair Granby Zoo, QC
1 Hair Bioparc, QC
2 Muscle U. of Alberta, AB
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2013 Northeastern Naturalist Vol. 20, No. 3
genes at positions 3094 (16S), 8681 (ND5), or 12,751 (ATP8). We relied on two
haplotypes to discriminate specimens from Central and South America (haplotype
I) from specimens originating from North America (haplotype II).
Results
The 476 hair samples collected from scratching posts, as well as the three
Cougar mortality samples were analyzed. Nineteen field samples were positively
identified as Cougars, and the identity of the three known Cougar mortality
samples was also confirmed. Of the remaining samples, 291 were identified as
non-Cougars and 166 (35% of the total) did not successfully amplify because of
low DNA quantity and quality. Some non-Cougar samples (n = 95) were further
selected at random and sequenced to determine their taxonomic identity using
a BLAST search in GenBank. These analyses indicated that Ursus americanus
(American Black Bear, n = 38), Odocoileus virginianus (White-tailed Deer, n =
15), Canis lupus (Gray Wolf, n = 13), Canis latrans (Coyote, n = 12), Alces alces
L. (Moose, n = 4), and Lynx canadensis (Canada Lynx, n = 2) among others, were
also attracted by the scratching posts.
The geographic origin of the field samples identified as Cougars was determined
on the basis of the corresponding haplotypes (Table 2). Out of these 19
positive field samples, six were assigned to haplotype I (South and Central America)
and ten to haplotype II (North America) using one of three mtDNA regions
(16S, ND5, ATP8); the remaining three samples were not sequenced due to lack
of material. Some of the samples collected at nearby localities at different times
may have originated from the same individual (Fig. 1). Namely, four samples (b,
c, e, g) with haplotype II were collected in Forillon National Park (QC) over five
years (2004–2009). Likewise, the two specimens (n, o) collected in Frontenac
National Park in 2009 and 2011 share the same haplotype II. On the other hand,
two samples (p, q) collected in Fundy National Park (NB) from nearby scratching
posts in 2003 were assigned to different haplotypes, thus certainly representing
distinct specimens. Three other Cougar samples (k, l, m) with different haplotypes
(I and II) were collected in the Montérégie (QC) from 2009 to 2011, likely
from two different individuals.
Sequence analysis was also performed in order to determine the origin of the
three known Cougar mortality samples. Haplotype data indicate that the specimen
killed in 1992 (t) is from South America, whereas the sample hit by a car in
1996 (u) is from North America. The sequence of the third Cougar killed in 2002
(v) was not conclusive and could not confirm its origin.
Discussion
The use of DNA in wildlife conservation and management has gained popularity
in recent years (Gupta 2012, Linacre and Tobe 2011, Ogden 2010 ), not only
to detect elusive animals (Verma et al. 2003), but also to track down poachers
(Tobe et al. 2011). A wide range of molecular techniques are routinely applied
L.D. Lang, N. Tessier, M. Gauthier, R. Wissink, H. Jolicoeur, and F-J. Lapointe
2013 Northeastern Naturalist Vol. 20, No. 3
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Table 2. Details of the 22 samples identified as Cougars (Puma concolor) in eastern Canada. Haplotype I = South and Central America, haplotype II =
North America, n/a: not sequenced. 16S = 16S rRNA region, ND5 = NADH-dehydrogenase-5 gene, ATP8 = ATPase-8 gene. QC = Québec, NB = New
Brunswick. The last three specimens (t, u, and v) are mortalities. ***Sequ ence < 200 bp (not allowed in Genbank).
Label Province Locality Date Sample type Haplotype Genbank# Region
a QC Gaspésie, Montagne Blanche 10 Sept 2001 Hair sample II DQ493937 16S
b QC Gaspésie, Forillon National Park 25 Aug 2004 Hair sample II EF028637 16S
c QC Gaspésie, Forillon National Park 26 Nov 2004 Hair sample II KC407690 16S
d QC Gaspésie, Forillon National Park 3 Jul 2007 Hair sample n/a
e QC Gaspésie, Forillon National Park 9 Sept 2007 Hair sample II EU655706 16S
f QC Gaspésie, Forillon National Park 23 May 2009 Hair sample n/a
g QC Gaspésie, Forillon National Park 28 Aug 2009 Hair sample II KC407696 ND5
h QC Gaspésie, ZEC des Anses 12 Jun 2006 Hair sample I *** ATP8
i QC Estrie, Ruiter Valley 30 Jan 2002 Hair sample n/a
j QC Estrie, Ruiter Valley 6 Mar 2002 Hair sample I EF028636 16S
k QC Montérégie, Massif des monts Sutton 26 May 2009 Hair sample II KC407692 ND5
l QC Montérégie, Massif des monts Sutton 18 Jul 2010 Hair sample I KC407697 ND5
m QC Montérégie, Massif des monts Sutton 2 May 2011 Hair sample I KC407691 16S
n QC Estrie, Frontenac National Park 17 Jun 2009 Hair sample II KC407695 ND5
o QC Estrie, Frontenac National Park 20 Aug 2010 Hair sample II KC407693 ND5
p NB Alma, Fundy National Park 22 July 2003 Hair sample I DQ493939 16S
q NB Alma, Fundy National Park 22 Oct 2003 Hair sample II DQ493940 16S
r QC Lac-Saint-Jean, ZEC Martin Valin 31 Oct 2002 Hair sample I DQ493938 16S
s QC Bas-St-Laurent, ZEC Casault 25 Oct 2007 Hair sample II KC407694 ND5
t QC Abitibi, Saint-Lambert 27 May 1992 Muscle I DQ493935 16S
u QC Estrie, East-Hereford Apr 1996 Tanned hair II DQ493936 16S
v QC Québec, Réserve des Laurentides 15 Sept 2002 Hair and blood n/a
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to identify specimens from scats or hair samples (Foran et al. 1997, Haag et al.
2009, Onorato et al. 2006, Sawaya et al. 2011, Swanson and Rusz 2006). In spite
of evidence provided by molecular data, the debate is still raging about the presence
of the Cougar in eastern Canada (see Lemelin 2009). On one side are those
who criticize it, reject it, or ignore it altogether (Carney 2006, Kurta et al. 2007,
Larivière 2012). On the other side stand those who endorse DNA evidence and
accept the verdict of molecular identification techniques. Indeed, several independent
studies (e.g., Bertrand et al. 2006, Harris 2007, Jung and Merchant 2005,
Leberg et al. 2004, Swanson and Rusz 2006) have relied on genetics to confirm
the presence of Cougars in different states (Michigan, Louisiana), provinces
(Ontario, New Brunswick), and territories (Yukon). In this study, we designed a
set of semi-nested primers to discriminate Cougars from other mammal species.
With 19 positive samples collected on a broad-scale over an 11-year period, our
results add to the evidence that Cougars are present in eastern Canada.
According to Culver et al. (2000), it is impossible to distinguish the Eastern
Cougar from the other North American subspecies on the basis of mtDNA variation.
In this study, our approach enabled us to distinguish two haplotypes of Cougars—
consistent with a North American or South American origin. Eleven samples identified
in the present study shared the North American haplotype. These Cougars could
have been migrants from the western or southern parts of the continent, namely
South Dakota (Nero and Wrigley 1977) or Florida (Maehr et al. 2002, 2003). Our results
also showed that seven Cougar samples shared the South American haplotype.
This finding suggests that these were either exotic individuals that were released or
escaped from captivity (see also Bertrand et al. 2006), or had a mixed ancestry. Yet,
if the North American subspecies actually occurs in eastern Canada, there may be
a possibility for outbreeding with exotic subspecies, as suggested by Scott (1998),
and this poses an additional challenge for conservation.
In light of the different hypotheses presented in McCollough (2011), it cannot
be concluded whether our positive identifications are (1) remnant individuals
of a persisting population of the Eastern Cougar, (2) escapees from captivity, or
(3) dispersers from western or southern populations. Additional analyses should
thus be completed using different markers (i.e., microsatellites) to determine the
dispersal patterns (Ernest et al. 2000, McRae et al. 2005) and the genetic structure
of Cougar populations (Anderson et al. 2004, Castilho et al. 2012, Ernest et al.
2003, Holbrook et al. 2012). Future work should also include molecular sexing
of Cougar samples, as this might allow identification of a haplotype associated
with dispersing males. Indeed, if the haplotype II individuals are predominantly
dispersing males, whereas the majority of the females are of haplotype I, then
outbreeding will be an even greater conservation challenge. Further work should
also use improved DNA-extraction methods to increase PCR success of degraded
hair samples collected in the field (e.g., Bekaert et al. 2012), as we found that
molecular identification was not always successful with our method because
many of the collected samples were mainly shed hairs, exempt of follicles (see
Gagneux et al. 1997, Goossens et al. 1998, Higuchi et al. 1988) .
L.D. Lang, N. Tessier, M. Gauthier, R. Wissink, H. Jolicoeur, and F-J. Lapointe
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Conservation biology requires not only scientific knowledge, it also relies
on social, technical, economical, legal, and political considerations (Clark et al.
1996). The conservation and management of Cougars in eastern North America is
a perfect example of such intricate problems. It not only suffers from the lack of information
on its presence in the wild (Bolgiano 1995), but also from inappropriate
assessment of biopolitical issues (Cardoza and Langlois 2002). Both the USFWS
(McCollough 2011) and Canadian Wildlife Service (Scott 1998) have concluded
there is no evidence that population(s) of the Eastern Cougar have persisted continuously
in northern New England/eastern Canada—or anywhere else in the historic
range of the Eastern Cougar. Nevertheless, Cougars are recolonizing the Midwest
(LaRue et al. 2012) and the species is indisputably present in eastern Canada. Upon
confirmation of its presence, education and conservation programs must be implemented,
and recovery plans should be established. Different states and provinces
already have management plans, but Québec still lacks one. Given that it is possible
that a viable population of Cougars exists in eastern Canada (Brocke and Van
Dyke 1985), we believe that COSEWIC should revisit the status of the species,
currently listed in the data deficient category. All thirteen species of wild felids in
the New World are currently listed as near threatened, threatened, endangered, or
vulnerable (IUCN 2011, Janczewski et al. 1995). Although public attitude can be
unstable towards conservation of large carnivores (Mech 1996), protection of the
Cougar is warranted in eastern Canada for maintaining biodiversity as well as for
the ecological role of the species.
Acknowledgments
We thank Clément Lanthier from the Calgary Zoo as well as Claude Daigle and
Pierre Canac-Marquis from the Ministère des Ressources naturelles et de la Faune
(MRNF) for providing hair samples of different mammal species. The Société Zoologique
de Granby, Ruiter Valley Land Trust, Fédération des Gestionnaires de Zecs
de la Gaspésie et du Bas-St-Laurent, FAPAQ, SEPAQ, Corridor Appalachien, Société
de Conservation de la Rivière au Saumon, Parcs Canada (Québec), Parcs Canada
(Maritimes), Fondation du Parc du Mont-Tremblant, Warden Service of Fundy, and
Cape Breton Highlands National Parks were instrumental in collecting hair samples
from the scratching posts in the field. Thanks to Dr. Cyrille Barrette, from Université
Laval, who provided a sample from the Cougar hit in Abitibi in 1992 and Jean Tanguay,
from the MRNF, who recovered the bumper of the car that killed the Cougar in
Réserve des Laurentides in 2002. We also thank two anonymous reviewers for their
constructive comments on an earlier draft of the paper. We gratefully acknowledge
the support of World Wildlife Fund, Environment Canada, Fondation de la Faune du
Québec, Institut de Recherche sur l’Environnement et la Faune, Envirotel 3000, Inc.,
ConservAction ACGT, Inc., and the Fundy National Park. This work was supported by
a NSERC scholarship to L.D. Lang and by a NSERC grant no. 015521 to F.J. Lapointe.
Literature Cited
Alpers, D.L., A.C. Taylor, P. Sunnucks, S.A. Bellman, and W.B. Sherwin. 2003. Pooling
hair samples to increase DNA yield for PCR. Conservation Genetics 4:779–788.
393
L.D. Lang, N. Tessier, M. Gauthier, R. Wissink, H. Jolicoeur, and F-J. Lapointe
2013 Northeastern Naturalist Vol. 20, No. 3
Anderson, C.R., F.G. Lindzey, and D.B. McDonald. 2004. Genetic structure of Cougar
populations acrosse the Wyoming basin: Metapopulation or megapopulation. Journal
of Mammalogy 85:1207–1214.
Beier, P., and S.C. Cunningham. 1996. Power of track surveys to detect changes in Cougar
populations. Wildlife Society Bulletin 24:540–546.
Bekaert, B., M.H.D. Larmuseau, M.P.M. Vanhove, A. Opdekamp, and R. Decorte. 2012.
Automated DNA extraction of single dog hairs without roots for mitochondrial DNA
analysis. Forensic Science International: Genetics 6:277–281.
Belant, J.L., S.E. Yancho, and K.S. Struthers. 2006. Does the Cougar inhabit Sleeping
Bear Dunes National Lakeshore? Natural Areas Journal 26:370–375.
Bertrand, A.-S., S. Kenn, D. Gallant, E. Tremblay, L. Vasseur, and R. Wissink. 2006.
MtDNA analyses on hair samples confirm Cougar, Puma concolor, presence in southern
New Brunswick, eastern Canada. Canadian Field-Naturalist 120:438–442.
Bolgiano, C. 1995. Do Cougars exist in the east? American Forests 101:29–30.
Bolgiano, C., T. Lester, D.W. Linzey, and D.S. Maehr. 2000. Field evidence of Cougars
in eastern North America. Pp. 34–39, In L.A. Harveson, P.M. Harveson, and R.W.
Adams (Eds.). Proceedings of the Sixth
Mountain Lion Workshop, Austin, TX.
Brocke, R.H., and F.G. Van Dyke. 1985. Eastern Cougars: The verifiability of the presence
of isolated individuals versus populations. Cryptozoology 4:102–105.
Brown, T. 2005. A search for Cougars (Puma concolor) in western Kentucky. Journal of
Service Learning in Conservation Biology 2:12–15.
Cardoza, J.E., and S.A. Langlois. 2002. The Eastern Cougar: A management failure?
Wildlife Society Bulletin 30:265–273.
Carney, T.R. 2006. Michigan Cougars and “voodoo science”. Pp. 142–147, In H.J. Mc-
Ginnis, J. W. Tischendorf, and S.J. Ropski (Eds.). Proceedings of the Eastern Cougar
Conference 2004, Morgantown, WV.
Castilho, C.S., L.G. Marins-Sá, R.C. Benedet, and T.R. Freitas. 2012. Genetic structure
and conservation of Mountain Lions in the south-Brazilian atlantic rain forest. Genetics
and Molecular Biology 35:67–73.
Clark, T.W., P.C. Paquet, and A.P. Curlee. 1996. Large carnivore conservation in the Rocky
Mountains of the United States and Canada. Conservation Biology 10:936–939.
Culver, M., W.E. Johnson, J. Pecon-Slattery, and S.J. O’Brien. 2000. Genomic ancestry
of the American Puma. Journal of Heredity 91:186–197.
Culver, M., M.A. Menotti-Raymond, and S.J. O’Brien. 2001. Patterns of size homoplasy
at 10 microsatellite loci in pumas (Puma concolor). Molecular Biology and Evolution
18:1151–1156
Cumberland, R.E., and J.A. Dempsey. 1994. Recent confirmation of a Cougar, Felis concolor,
in New-Brunswick. Canadian Field-Naturalist 108:224–226.
Downing, R.L. 1984 The search for Cougars in the eastern United States. Cryptozoology
3:31–49.
Ernest, H.B., M.C.T. Penedo, B.P. May, M. Syvanen, and W.M. Boyce. 2000. Molecular
tracking of Mountain Lions in the Yosemite Valley region in California: Genetic
analysis using microsatellites and fecal DNA. Molecular Ecology 9:433–441.
Ernest, H.B., W.M. Boyce, V.C. Bleich, B. May, S.J. Stiver, and S.G. Torres. 2003. Genetic
structure of Mountain Lion (Puma concolor) populations in California. Conservation
Genetics 4:353–366.
Fernandez, G.J., J.C. Corley, and A.F. Capurro. 1997. Identification of Cougar and
Jaguar feces through bile acid chromatography. Journal of Wildlife Management
61:506–510.
L.D. Lang, N. Tessier, M. Gauthier, R. Wissink, H. Jolicoeur, and F-J. Lapointe
2013 Northeastern Naturalist Vol. 20, No. 3
394
Foran, D.R., S.C. Minta, and K.S. Heinemeyer. 1997. DNA-based analysis of hair to
identify species and individuals for population research and monitoring. Wildlife
Society Bulletin 25:840–847.
Frantz, A.C., M. Schaul, L.S. Pope, F. Fack, L. Schley, C.P. Muller, and T.J. Roper. 2004.
Estimating population size by genotyping remotely plucked hair: The Eurasian Badger.
Journal of Applied Ecology 41:985–995.
Gagneux, P., C. Boesch, and D. Woodruff. 1997. Microsatellite scoring errors associated
with noninvasive genotyping based on nuclear DNA amplified from shed hair. Molecular
Ecology 6:861–868.
Gerson, H.B. 1988. Cougar, Felis concolor, sightings in Ontario. Canadian Field-Naturalist
102:419–424.
Goossens, B., L.P. Waits, and P. Taberlet. 1998. Plucked hair samples as a source of
DNA: Reliability of dinucleotide microsatellite genotyping. Molecular Ecology
7:1237–1241.
Gupta, S.K. 2012. DNA wildlife forensics: Present and future. Journal of Forensic Research
3:3.
Haag, T., A.S. Santos, C. De Angelo, A.C. Srbek-Araujo, D.A. Sana, R.G. Morato, F.M.
Salzano, and E. Eizirik. 2009. Development and testing of an optimized method for
DNA-based identification of Jaguar (Panthera onca) and Puma (Puma concolor) faecal
samples for use in ecological and genetic studies. Genetica 136:505–512.
Hall, E.R. 1981. The Mammals of North America. John Wiley and Sons, New York, NY.
Harris, E. 2007. Cougars on the move: After decades of fleeting glimpses and speculation,
DNA analysis proves that the elusive Puma is reinhabiting its range in Ontario.
Canadian Geographic 127:46–48.
Harrison, R.L. 2002. Evaluation of microscopic and macroscopic methods to identify
felid hair. Wildlife Society Bulletin 30:412–419.
Heist, E.J, J.R. Bowles, and A. Woolf. 2001. Record of a North American Cougar (Puma
concolor) from Southern Illinois. Transactions of the Illinois State Academy of Science
94:227–229.
Higuchi, R., C.H. von Beroldingen, G.F. Sensabaugh, and H.A. Erlich. 1988. DNA typing
from single hairs. Nature 332:543–546.
Holbrook, J.D., R.W. DeYoung, J.E. Janecka, M.E. Tewes, R.L. Honeycutt, and J.H.
Young. 2012. Genetic diversity, population structure, and movements of Mountain
Lions (Puma concolor) in Texas. Journal of Mammalogy 93:989–1000.
International Union for the Conservation of Nature (IUCN). 2011. IUCN Red list of
threatened species. Available online at http://www.iucnredlist.org. Accessed 11 June
2012.
Janczewski, D.D., W.S. Modi, J.C. Stephens, and S.J. O’Brien. 1995. Molecular evolution
of mitochondrial 12S RNA and Cytochrome b sequences in the Pantherine lineage
of Felidae. Molecular Biology and Evolution 12:690–707.
Johnson, W.E., M. Culver, J.A. Iriarte, E. Eizirik, K.L. Seymour, and S.J. O’Brien. 1998.
Tracking the evolution of the elusive Andean Mountain Cat (Oreailurus jacobita)
from mitochondrial DNA. Journal of Heredity 89:227–232.
Jolicoeur, H., A. Paquet, and J. Lapointe. 2006. Sur la piste du Couguar (Puma concolor)
au Québec, 1955–2005: Analyse des rapports d’observations. Canadian Field-Naturalist
130:49–58.
Jung, T.S., and P.J. Merchant. 2005. First confirmation of Cougar, Puma concolor, in the
Yukon. Canadian Field-Naturalist 119:580–581.
395
L.D. Lang, N. Tessier, M. Gauthier, R. Wissink, H. Jolicoeur, and F-J. Lapointe
2013 Northeastern Naturalist Vol. 20, No. 3
Kurta, A., M.K. Schwartz, and C.R. Anderson. 2007. Does a population of Cougars exist
in Michigan? American Midland Naturalist 158:467–471.
Kurushima, J., J. Well, J. Collins, and H.B. Ernest. 2006. Development of 21 microsatellite
loci for Puma (Puma concolor) ecology and forensics. Molecular Ecology Notes
6:1260–1262.
Kwok, S., and R. Higuchi. 1989. Avoiding false positives with PCR. Nature 339:237–238.
Larivière, S. 2012. Dix raisons de demeurer sceptique quant à la présence de Cougars
(Puma concolor) sauvages au Québec. Naturaliste Canadien 136:42–47
LaRue, M.A., C.K. Nielsen, M. Dowling, K. Miller, B. Wilson, H. Shaw, and C.R. Anderson.
2012. Cougars are recolonizing the Midwest: Analysis of Cougar confirmations
during 1990–2008. Journal of Wildlife Management 76:1364–1369.
Leberg, P.L, M.R. Carloss, L.J. Dugas, K.L. Pilgrim, L.S. Mills, M.C. Green, and D.
Scognamillo. 2004. Recent record of a Cougar (Puma concolor) in Louisiana, with
notes on diet, based on analysis of fecal materials. Southeastern Naturalist 3:653–658.
Lemelin, R.H. 2009. Doubting Thomases and the Cougar: The perceptions of Puma management
in Northern Ontario, Canada. Sociologia Ruralis 49:56–69.
Lewinson, R., E.L. Fitzhugh, and S.P. Galentine. 2001. Validation of a rigorous track
classification technique: Identifying individual Mountain Lions. Biological Conservation
99:313–321.
Linacre, A., and S.S. Tobe. 2011. An overview to the investigative approach to species in
wildlife forensic science. Investigative Genetics 2:2.
Lopez, J.V., M. Culver, J.C. Stephens, W.E. Johnson, and S.J. O’Brien. 1997. Rates of
nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals. Molecular
Biology and Evolution 14:277–286.
Lutz, J., and L. Lutz. 1996. The Eastern Puma. Pp. 127–138, In J.W. Tischendorf, and S.J.
Ropski (Eds.). Proceedings of the Eastern Cougar Conference. American Ecological
Research Institute, Fort Collins, CO.
Maehr, D.S., E.D. Land, D.B. Shindle, O.L. Bass, and T.S. Hoctor. 2002. Florida Panther
dispersal and conservation. Biological Conservation 106:187–197.
Maehr, D.S., M.J. Kell, C. Bolgiano, T. Lester, and H. McGinnis. 2003. Eastern Cougar
recovery is linked to the Florida Panther: Cardoza and Langlois revisited. Wildlife
Society Bulletin 31:849–853.
McCollough, M. 2011. Eastern Puma (= Cougar) (Puma concolor cougar) 5 years review:
Summary and evaluation. US Fish and Wildlife Service, Orono, ME.
McRae, B.H., P. Beier, L.E. Dewald, L.Y. Huynh, and P. Keim. 2005. Habitat barriers
limit gene flow and illuminate historical events in a wide-ranging carnivore, the
American Puma. Molecular Ecology 14:1965–1977.
Mech, L.D. 1996. A new era for the carnivore conservation. Wildlife Society Bulletin
24:397–401.
Mills, L.S., K.L. Pilgrim, M.K. Schwartz, and K. McKelvey. 2000. Identifying Lynx
and other North American felids based on mtDNA analysis. Conservation Genetics
1:285–288.
Nero, R.W., and R.E. Wrigley. 1977. Status and habits of the Cougar in Manitoba. Canadian
Field-Naturalist 91:28–40.
Ogden, R. 2010. Forensic science, genetics and wildlife biology: Getting the right mix for
a wildlife DNA forensics lab. Forensic Science, Medecine, and Pathology 6:172–179.
Olsen, J.B., J.K. Wenburg, and P. Bentzen. 1996. Semi-automated multilocus genotyping
of Pacific Salmon (Oncorhynchus spp.) using microsatellites. Molecular Marine Biology
and Biotechnology 5:259–272.
L.D. Lang, N. Tessier, M. Gauthier, R. Wissink, H. Jolicoeur, and F-J. Lapointe
2013 Northeastern Naturalist Vol. 20, No. 3
396
Onorato, D., C. White, P. Zager, and L.P. Waits. 2006. Detection of predator presence at
Elk mortality sites using mtDNA analysis of hair and scat samples. Wildlife Society
Bulletin 34:815–820.
Parker, G. 1998. The Eastern Panther: Mystery Cat of the Appalachians. Nimbus, Halifax,
NS.
Rodzen, J.A., J.D. Banks, E.P. Meredith, and K.C. Jones. 2007. Characterization of 37
microsatellite loci in Mountain Lions (Puma concolor) for use in forensic and population
applications. Conservation Genetics 8:1239–1241.
Roon, D.A., L.P. Waits, and K.C. Kendall. 2003. A quantitative evaluation of two methods
for preserving hair samples. Molecular Ecology Notes 3:163–166.
Rosatte, R. 2011. Evidence to support the presence of Cougars (Puma concolor) in Ontario,
Canada. Canadian Field-Naturalist 125:116–125.
Sawaya, M.A., T.K. Ruth, S. Creel, J.J. Rotella, J.B. Stetz, H.B. Quigley, and S.T. Kalinowski.
2011. Evaluation of noninvasive genetic sampling methods for Cougars in
Yellowstone National Park. Journal of Wildlife Management 75:612–622.
Scott, F. 1998. Updated COSEWIC Status Report on Cougar (Puma concolor couguar)
[eastern population]. Committee on the Status of Endangered Wildlife in Canada,
Ottawa, ON.
Smallwood, K.S., and E.L. Fitzhugh. 1993. A rigorous technique for identifying individual
Mountain Lions, Felis concolor, by their tracks. Biological Conservation
65:51–59.
Stocek, R.F. 1995. The Cougar, Felis concolor, in the maritime provinces. Canadian
Field-Naturalist 109:19–22.
Swanson, B.J., and P.J. Rusz. 2006. Detection and classification of Cougars in Michigan
using low-copy DNA sources. American Midland Naturalist 155:363–372.
Taberlet, P., L.P. Waits, and G. Luikart. 1999. Noninvasive genetic sampling: Look before
you leap. Trends in Ecology and Evolution 14:323–327.
Tardif, J. 1997. Observations du Couguar au Québec, de 1955 à 1995. Ministère de
l’Environnement et de la Faune. Direction de la faune et des ha bitats, Québec, QC.
Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The
ClustalX windows interface: Flexible strategies for multiple sequence alignment
aided by quality analysis tools. Nucleic Acids Research 24:4876–4882.
Tobe, S.S., J. Govan, and L.A. Welch. 2011. Recovery of human DNA profiles from
poached deer remains: A feasibility study. Science and Justice 51:190–195.
van Dyke, F.G., and R.H. Brocke. 1987. Sightings and track reports as indices of Mountain
Lion presence. Wildlife Society Bulletin 15:251–256.
Van Zyll de Jong, G.G., and E. van Ingen. 1978. Status report on Eastern Cougar, Felis
concolor cougar, in Canada. Committee on the Status of Endangered Wildlife in
Canada, Ottawa, ON, Canada.
Verma, S.K., K. Prasad, N. Nagesh, M. Sultana, and L. Singh. 2003. Was elusive carnivore
a panther? DNA typing of faeces reveals the mystery. Forensic Science International
137:16–20.
Wilson, D.E., and D.M. Reeder. 2005. Mammal Species of the World. Johns Hopkins
University Press, Baltimore, MD.
Wright, B.S. 1953. Further notes on the Panther in the northeast. Canadian Field-Naturalist
67:12–13.
Wright, B.S. 1961. The latest specimen of the Eastern Puma. Journal of Mammalogy
42:278–279.
Young, S.P., and E.A. Goldman. 1946. The Puma: Mysterious American Cat. American
Wildlife Institute, Washington, DC.